Publications, training, resources

Publications, training, resources


Our publications [updated regularly]

  • 2024. More than food: Why restoring the cycle of organic matter in sustainable plant production is essential for the One Health nexus [CABI Reviews]
  • 2024. An approach to on-demand extension of multidimensional cubes in multi-model settings: Application to IoT-based agro-ecology [Data & Knowledge Engineering]
  • 2023. Be high on emotion: Coping with emotions and emotional intelligence when querying data [ADBIS 2023: New Trends in Database and Information Systems]
  • 2003. Computing Geographical Networks Generated by Air-Mass Movement [GeoHealth]
  • 2023. Towards a multi-model approach to support user-driven extensibility in data warehouses: Agro-ecology case study [EDBT/ICDT 2023 Joint Conference]
  • 2023. Logical design of multi-model data warehouses [Knowledge and Information Systems]
  • 2023. Global benefits and domestic costs of a cooperative surveillance strategy to control transboundary crop pathogens [Plants, People, Planet]
  • 2023. SNEToolkit: Spatial named entities disambiguation toolkit [SoftwareX]
  • 2023. Could keyword masking strategy improve language model? [Natural Language Processing and Information Systems Conf. paper]
  • 2023. Omnicrobe, an open-access database of microbial habitats and phenotypes using a comprehensive text mining and data fusion approach  [PLoS ONE]
  • 2023. Origin of isolated cases of “flavescence doree” in North-East of France: Search for reservoir plants and insect vectors in semi-natural habitats near vineyards. [Phytopathogenic Mollicutes]
  • 2022. VCISOLAP: A UML Profile for Variety Aware Data Warehouse [Recherche Data Gouv]
  • 2022. Early-detection surveillance for stem rust of wheat: insights from a global epidemic network based on airborne connectivity and host phenology [Environmental Research Letters]
  • 2022. The ecological significance of arthropod vectors of plant, animal, and human pathogens [Trends in Parasitology]
  • 2022. One Health concepts and challenges for surveillance, forecasting and mitigation of plant disease beyond the traditional scope of crop production [Plant Pathology]

Training courses

  • 2023. 21-22 Nov. Training course on Basics of Plant Epidemiological Surveillance, University of Montpellier, GAIA doctoral school. See News for details.

PhD in progress [updated regularly]

  • 2022-2025. Identifier les trajectoires probables de dissémination de phytopathogènes vectés par des hémiptères pour une meilleure prophylaxie. Margaux Darnis, ED536 Agrosciences & Sciences, Avignon Université
  • 2021-2024. Enhanced risk-based surveillane of Xylella fastidiosa. Camille Portes. ED536 Sciences & Agrosciences, Avignon Université
  • 2021-2024. Multi-model data warehouse for epidemiology monitoring: from design to implementation. Coulibaly Fagnine Alassane. ED70 Sciences pour l'Ingenieur, Université Clermont Auvergne
  • 2021-2024. Information extraction from textual data for epidemiosurveillance for plant health. Mariya Borovikova. ED580 Sciences et Technologie de l'information et de la communication STIC. Université Paris-Saclay
  • 2021-2024. Construction et analyse des réseaux pour la surveillance des pathogènes aériens. Andrea Radici. ED536 Sciences & Agrosciences, Avignon Université

Internship reports [updated regularly]

  • 2022. Psylve - A Text-to-Ontology Information Extraction Framework for the Occurrence Distribution of Plant Pathogen Vectors. Elisa Lubrini, Master of Science in Natural Language Processing, Université de Lorraine [download report]
  • 2022. Reconstruction des scénarios évolutifs d'introduction et d'expansion en Europe des psylles du complexe Cacopsylla pruni. Margaux Darnis, Master 2 Biodiversité, Ecologie, Evolution; Sorbonne Université [download report]

Ecophyto's updates on Integrated Pest Management

  • Search the Ecophyto website for their newsletter "Lettre @ PIC" and for regularly updated information on biocontrol, reduction of pesticide inputs, etc at

Other projects in France's Priority Research Program on "Growing and Protecting Crops Differently"

  • BECREATIVE  - Co-conception of territories without pesticides
  • CAPZEROPHYTO  - Adaptation of the concept of ecological immunity to the protection of crops
  • DEEPIMPACT  - Analysis of plant-microbiote interactions to promote plant defenses against bioaggressors
  • FAST  - Facilitate public action to exit from pesticides
  • MOBIDIV  - Mobilise and select intra and inter-specific diversity of cultivated plants for a systemic change toward agriculture without pesticides
  • PHEROSENSOR  - Early detection of insect pests via olifacive probes based on pheromone receptors
  • SPECIFICS  - Conception of cropping systems without pesticides that are rich in legumes and grains
  • SUCSEED  - Terminate the use of pesticides on seeds and propose alternatives
  • VITAE  - Cultivate vineyards without pesticides - toward agroecological wine-growing socio-ecosystems

Modification date : 05 April 2024 | Publication date : 21 January 2021 | Redactor : C.E. Morris